Photoperiodism

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Photoperiodism: 24-h rhythmic genes

24-h rhythmic genes both in short-day and long-day conditions (Help)

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Probe set ID P-value FDR Symbol Name Gene Category phase (short day) phase (long day) max. correl. (short day) max. correl. (long day) amplitude (short day) amplitude (long day) rel. amplitude (short day) [desc] rel. amplitude (long day)
1 1427126_at [new page][B* page] 0.000591183 0.035254 Hspa1b heat shock protein 1B 20.4418 0.789166 0.825541 418.467 348.406 1.42797 1.75437 0.0110463
2 1439163_at [new page][B* page] 0.000599004 0.0355469 Zbtb16 zinc finger and BTB domain containing 16 TF 18.4604 0.872269 0.708018 443.373 766.321 1.34776 1.74312 0.00134143
3 1427127_x_at [new page][B* page] 0.000579613 0.0348861 Hspa1b heat shock protein 1B 20.2941 0.765245 0.844262 619.843 511.649 1.43881 1.7134 0.0173244
4 1452318_a_at [new page][B* page] 0.000396616 0.0283933 Hspa1b heat shock protein 1B 20.0079 0.754075 0.865426 1135.15 1054.16 1.27044 1.51038 0.0208743
5 1452388_at [new page][B* page] 0.000814988 0.0407044 Hspa1a heat shock protein 1A 20.9348 0.803374 0.797022 559.716 538.602 1.01929 1.38141 0.00826257
6 1438211_s_at [new page][B* page] 3.2551e-06 0.00222221 Dbp D site albumin promoter binding protein TF 13.054 0.946435 0.820706 5755.18 5120.13 1.4694 1.33637 3.54759e-05
7 1418174_at [new page][B* page] 0.000126199 0.0145941 Dbp D site albumin promoter binding protein TF 13.2509 0.866128 0.817091 1742.18 1142.51 1.79709 1.29291 0.00165739
8 1435188_at [new page][B* page] 0.00014304 0.0155827 Gm129 predicted gene 129 14.4647 0.900766 0.742931 224.65 208.43 1.30091 1.24026 0.000463404
9 1417602_at [new page][B* page] 1.1134e-08 0.000145124 Per2 period homolog 2 (Drosophila) TF 17.1449 0.971705 0.929008 323.916 431.892 1.11776 1.15459 4.43449e-06
10 1434817_s_at [new page][B* page] 1.78808e-05 0.00536758 Rprd2 regulation of nuclear pre-mRNA domain containing 2 10.1074 0.853146 0.898933 46.039 67.835 0.874915 1.13677 0.00242567
11 1425099_a_at [new page][B* page] 4.65463e-08 0.000245668 Arntl aryl hydrocarbon receptor nuclear translocator-like TF 3.27354 0.983678 0.859557 514.646 549.081 0.94154 1.10836 1.10862e-06
12 1426464_at [new page][B* page] 4.44775e-07 0.000673185 Nr1d1 nuclear receptor subfamily 1, group D, member 1 TF NR 10.1297 0.951303 0.877252 335.583 269.552 1.03792 1.02136 2.10638e-05
13 1418932_at [new page][B* page] 1.68572e-05 0.00514583 Nfil3 nuclear factor, interleukin 3, regulated TF 23.9853 0.905162 0.845913 102.522 126.137 0.701452 0.964543 0.000388018
14 1431406_at [new page][B* page] 0.00020266 0.0190367 Agxt2l1 alanine-glyoxylate aminotransferase 2-like 1 17.547 0.898415 0.724975 45.9469 67.7188 0.916362 0.961704 0.000516618
15 1433733_a_at [new page][B* page] 7.51138e-05 0.0108929 Cry1 cryptochrome 1 (photolyase-like) TF 22.0826 0.860559 0.84623 205.993 157.651 1.20166 0.960012 0.00195894
16 1457350_at [new page][B* page] 4.88684e-07 0.000673185 Per2 period homolog 2 (Drosophila) TF 17.2433 0.954874 0.86736 161.142 164.877 0.853574 0.956844 1.66293e-05
17 1433398_at [new page][B* page] 1.04788e-07 0.000322535 Fgd3 FYVE, RhoGEF and PH domain containing 3 3.85734 0.961562 0.895681 220.316 161.464 1.24401 0.951477 8.86898e-06
18 1429169_at [new page][B* page] 1.12042e-06 0.00129569 Rbm3 RNA binding motif protein 3 19.0031 0.876189 0.940789 154.642 136.011 0.994051 0.912254 0.00117403
19 1452218_at [new page][B* page] 0.000511537 0.0328455 Ccdc117 coiled-coil domain containing 117 20.0041 0.746254 0.860395 118.363 157.376 0.82927 0.907557 0.0237024
20 1421037_at [new page][B* page] 2.89781e-05 0.00660072 Npas2 neuronal PAS domain protein 2 TF 3.90781 0.848382 0.889713 79.9658 52.8328 1.26381 0.90411 0.0027638
21 1423566_a_at [new page][B* page] 0.000303321 0.0245161 Hsph1 heat shock 105kDa/110kDa protein 1 22.1621 0.883823 0.734876 1289.03 2053.89 0.819215 0.89841 0.000930135
22 1450779_at [new page][B* page] 5.02851e-08 0.000245668 Fabp7 fatty acid binding protein 7, brain Ng 7.3529 0.922582 0.956773 815.454 962.863 0.694502 0.894705 0.000167402
23 1438862_at [new page][B* page] 2.4307e-05 0.00612441 A630005I04Rik RIKEN cDNA A630005I04 gene 2.13243 0.925877 0.782551 61.8575 68.2233 0.716988 0.888496 0.000135252
24 1417149_at [new page][B* page] 5.27617e-05 0.00906821 P4ha2 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide 21.4942 0.875049 0.842687 393.033 605.022 0.47517 0.873749 0.00122281
25 1436387_at [new page][B* page] 0.000313998 0.0248014 C330006P03Rik RIKEN cDNA C330006P03 gene 22.1427 0.778634 0.859556 259.909 250.86 1.08159 0.872747 0.0135962
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TF=Transcription Factor; Ch=Channel; GPCR=GPCR; CA=Cell Adhesion; EM=Extracellular Matrix; SP=Structural Protein; Ng=Neurogenesis; Hox=Homeobox; NR=Nuclear Receptor; NH/NT=NH/NT; AG=Axon Guidance; SLC=SLC Transporter; Fox=Forkhead
Copyright © 2010 RIKEN Center for developmental Biology.