Photoperiodism

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Photoperiodism: 24-h rhythmic genes

24-h rhythmic genes both in short-day and long-day conditions (Help)

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Probe set ID P-value FDR Symbol Name Gene Category phase (short day) phase (long day) [asc] max. correl. (short day) max. correl. (long day) amplitude (short day) amplitude (long day) rel. amplitude (short day) rel. amplitude (long day)
1 1428652_at [new page][B* page] 0.000156526 0.0162287 0610010F05Rik RIKEN cDNA 0610010F05 gene 14.0578 0.26853 0.95339 225.866 274.204 0.180434 0.205285 0.719216
2 1419518_at [new page][B* page] 0.000640189 0.036456 Tuba8 tubulin, alpha 8 SP 6.14813 0.349777 0.930776 31.6984 96.4354 0.207902 0.642428 0.560786
3 1435236_at [new page][B* page] 0.000470129 0.0312005 Tceanc transcription elongation factor A (SII) N-terminal and central domain containing TF 9.86147 0.356443 0.935055 67.6937 74.4731 0.347075 0.328955 0.547429
4 1442294_at [new page][B* page] 0.00107502 0.0466197 A530053G22Rik RIKEN cDNA A530053G22 gene 17.5911 0.367739 0.919792 1.94003 3.45489 0.133605 0.249408 0.524757
5 1430316_at [new page][B* page] 2.40968e-05 0.00612001 Ispd isoprenoid synthase domain containing 10.5368 0.441268 0.968442 97.7553 78.6497 0.284342 0.221152 0.380177
6 1436888_at [new page][B* page] 0.00053687 0.0334076 Nhlh2 nescient helix loop helix 2 TF 10.7462 0.446918 0.92648 94.6035 95.7061 0.437358 0.362513 0.369544
7 1437351_at [new page][B* page] 0.000783122 0.0396849 Cxxc4 CXXC finger 4 8.30293 0.461232 0.918436 252.678 251.136 0.15571 0.152186 0.343112
8 1455665_at [new page][B* page] 0.00106205 0.0464331 Lonrf1 LON peptidase N-terminal domain and ring finger 1 17.4938 0.479741 0.909017 652.759 369.89 0.78977 0.420359 0.309962
9 1437459_x_at [new page][B* page] 0.00104874 0.0461906 Slc25a19 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 SLC 12.0818 0.508031 0.904745 2.6028 1.86632 0.167516 0.12781 0.261746
10 1436003_at [new page][B* page] 0.00121801 0.0497136 Vcam1 vascular cell adhesion molecule 1 CA 15.3216 0.512027 0.899873 2.97261 2.65017 0.177035 0.152471 0.255133
11 1423130_a_at [new page][B* page] 0.000547569 0.0335542 Srsf5 serine/arginine-rich splicing factor 5 TF 7.1194 0.52012 0.919319 2195.73 2531.78 0.355235 0.278349 0.242348
12 1424408_at [new page][B* page] 0.000764026 0.0394671 Lims2 LIM and senescent cell antigen like domains 2 2.06176 0.538544 0.908804 242.208 165.659 0.27995 0.232499 0.213857
13 1415839_a_at [new page][B* page] 0.000776035 0.0395995 Npm1 nucleophosmin 1 TF 14.7421 0.546828 0.906928 1092.83 687.59 0.201385 0.128106 0.201751
14 1428303_at [new page][B* page] 0.000681545 0.037296 Btbd17 BTB (POZ) domain containing 17 5.01129 0.553439 0.909367 42.019 33.0228 0.326571 0.255294 0.192282
15 1431058_at [new page][B* page] 0.000851144 0.0415449 Htatsf1 HIV TAT specific factor 1 TF 12.331 0.556115 0.902438 13.8087 11.8202 0.238359 0.211341 0.188588
16 1443221_at [new page][B* page] 0.000701174 0.037737 22.2028 0.556278 0.908099 4.42784 3.31662 0.275062 0.219005 0.188357
17 1429627_at [new page][B* page] 0.000374262 0.0276262 Ppil3 peptidylprolyl isomerase (cyclophilin)-like 3 9.66661 0.558565 0.921675 218.549 131.551 0.176189 0.10311 0.185285
18 1438995_at [new page][B* page] 0.00117305 0.048715 23.9642 0.569124 0.892065 14.0617 16.9457 0.253907 0.315158 0.171087
19 1434261_at [new page][B* page] 0.00047219 0.031272 Sipa1l2 signal-induced proliferation-associated 1 like 2 19.4743 0.588911 0.912439 223.138 138.071 0.357212 0.199338 0.145852
20 1451654_x_at [new page][B* page] 0.000667568 0.037296 Zfp825 zinc finger protein 825 TF 12.8274 0.595309 0.901259 38.1334 26.4055 0.353241 0.201368 0.138188
21 1427042_at [new page][B* page] 0.000590959 0.035254 Mal2 mal, T-cell differentiation protein 2 10.4319 0.595707 0.90466 110.033 79.26 0.218991 0.189674 0.137682
22 1433794_at [new page][B* page] 0.00117858 0.0487216 Setx senataxin 13.4685 0.596557 0.886184 593.808 642.53 0.209407 0.212215 0.136653
23 1453804_a_at [new page][B* page] 0.000113331 0.0135894 Orc4l origin recognition complex, subunit 4-like (S. cerevisiae) 18.8797 0.599854 0.936693 102.407 124.606 0.224446 0.277244 0.132788
24 1456415_at [new page][B* page] 0.00116284 0.0485603 Zfp451 zinc finger protein 451 TF 19.8236 0.600863 0.885503 211.182 186.597 0.341695 0.283816 0.131568
25 1434787_at [new page][B* page] 0.000576338 0.0347506 Arf3 ADP-ribosylation factor 3 21.5578 0.607818 0.903081 69.946 59.5371 0.209172 0.171268 0.123578
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TF=Transcription Factor; Ch=Channel; GPCR=GPCR; CA=Cell Adhesion; EM=Extracellular Matrix; SP=Structural Protein; Ng=Neurogenesis; Hox=Homeobox; NR=Nuclear Receptor; NH/NT=NH/NT; AG=Axon Guidance; SLC=SLC Transporter; Fox=Forkhead
Copyright © 2010 RIKEN Center for developmental Biology.