Photoperiodism

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Photoperiodism: 24-h rhythmic genes

24-h rhythmic genes both in short-day and long-day conditions (Help)

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Probe set ID P-value FDR Symbol Name Gene Category phase (short day) phase (long day) max. correl. (short day) max. correl. (long day) [asc] amplitude (short day) amplitude (long day) rel. amplitude (short day) rel. amplitude (long day)
1 1438091_a_at [new page][B* page] 7.16157e-05 0.0106348 H2afz H2A histone family, member Z 9.53224 0.903582 0.7809 893 791.751 0.316861 0.31617 0.000419059
2 1442294_at [new page][B* page] 0.00107502 0.0466197 A530053G22Rik RIKEN cDNA A530053G22 gene 17.5911 0.367739 0.919792 1.94003 3.45489 0.133605 0.249408 0.524757
3 1430630_at [new page][B* page] 0.000645642 0.0366278 9.50872 0.923521 0.439926 10.414 4.95263 0.391431 0.200434 0.000157424
4 1420394_s_at [new page][B* page] 0.000931195 0.0437477 Gp49a glycoprotein 49 A 6.38447 0.90502 0.526287 10.7836 11.0885 0.269775 0.287269 0.000388018
5 1437135_at [new page][B* page] 0.000668487 0.037296 Fbxw10 F-box and WD-40 domain protein 10 9.51485 0.653143 0.888252 10.8238 9.5868 0.23647 0.212169 0.0793064
6 1434410_at [new page][B* page] 0.000360811 0.0271668 Crybg3 beta-gamma crystallin domain containing 3 3.85296 0.856454 0.774997 100.029 74.5604 0.420496 0.359186 0.00219175
7 1460519_a_at [new page][B* page] 0.000129074 0.0147137 Mettl5 methyltransferase like 5 8.28844 0.88993 0.776956 100.763 49.2129 0.296544 0.161299 0.000738343
8 1438183_x_at [new page][B* page] 7.49673e-05 0.0108929 Sord sorbitol dehydrogenase 13.5893 0.932426 0.678747 100.894 83.5694 0.537016 0.513883 9.64502e-05
9 1456981_at [new page][B* page] 0.000335925 0.0260319 Tmc7 transmembrane channel-like gene family 7 18.6088 0.785507 0.852397 101.241 82.2069 0.382747 0.286387 0.0118612
10 1444726_at [new page][B* page] 0.000994711 0.0452699 Krr1 KRR1, small subunit (SSU) processome component, homolog (yeast) 10.3906 0.80436 0.784854 101.49 58.7528 0.416373 0.266382 0.00807632
11 1428551_at [new page][B* page] 0.00039435 0.0283662 Trmt11 tRNA methyltransferase 11 homolog (S. cerevisiae) 9.78174 0.822044 0.814065 101.64 120.304 0.388004 0.462094 0.00538015
12 1452467_at [new page][B* page] 0.000459036 0.0308999 Mmab methylmalonic aciduria (cobalamin deficiency) type B homolog (human) 0.178379 0.89697 0.657991 101.978 67.5072 0.5126 0.290952 0.000549877
13 1438928_x_at [new page][B* page] 0.000761115 0.0394564 Ninj1 ninjurin 1 CA 3.48167 0.818126 0.784256 1016.41 320.607 0.504326 0.271103 0.00592892
14 1425891_a_at [new page][B* page] 5.69761e-05 0.00947431 Grtp1 GH regulated TBC protein 1 8.51839 0.855176 0.862096 102.267 71.1323 0.26327 0.204739 0.00227933
15 1451562_at [new page][B* page] 0.00106783 0.0465113 A2ld1 AIG2-like domain 1 7.6611 0.878318 0.635169 102.321 63.6336 0.29416 0.166231 0.00110308
16 1453804_a_at [new page][B* page] 0.000113331 0.0135894 Orc4l origin recognition complex, subunit 4-like (S. cerevisiae) 18.8797 0.599854 0.936693 102.407 124.606 0.224446 0.277244 0.132788
17 1418932_at [new page][B* page] 1.68572e-05 0.00514583 Nfil3 nuclear factor, interleukin 3, regulated TF 23.9853 0.905162 0.845913 102.522 126.137 0.701452 0.964543 0.000388018
18 1448930_at [new page][B* page] 0.000142884 0.0155827 3010026O09Rik RIKEN cDNA 3010026O09 gene 8.82309 0.610007 0.932499 102.676 39.991 0.543117 0.242603 0.121166
19 1423723_s_at [new page][B* page] 4.53703e-05 0.00842076 Tardbp TAR DNA binding protein TF 22.601 0.873583 0.850656 1024.88 1302.19 0.513481 0.499357 0.00128379
20 1447223_at [new page][B* page] 2.41538e-05 0.00612001 10.6467 0.922989 0.791163 103.612 100.151 0.437825 0.4522 0.000159642
21 1416756_at [new page][B* page] 0.000771939 0.0395627 Dnajb1 DnaJ (Hsp40) homolog, subfamily B, member 1 20.5644 0.869756 0.693006 104.052 103.253 0.48313 0.669979 0.0014656
22 1445892_at [new page][B* page] 0.000639859 0.036456 17.1114 0.863315 0.723507 104.152 79.0262 0.570699 0.491902 0.00178599
23 1422567_at [new page][B* page] 5.04086e-05 0.00875946 Fam129a family with sequence similarity 129, member A 5.30003 0.896242 0.814103 104.548 62.973 0.698048 0.435238 0.000574267
24 1434568_at [new page][B* page] 0.000725323 0.0384856 7.53117 0.791529 0.814004 104.758 51.913 0.337996 0.186583 0.0105064
25 1437429_at [new page][B* page] 0.000140537 0.0154999 Adamtsl1 ADAMTS-like 1 EM 6.14042 0.908868 0.723195 104.936 42.4968 0.580125 0.286151 0.00033813
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TF=Transcription Factor; Ch=Channel; GPCR=GPCR; CA=Cell Adhesion; EM=Extracellular Matrix; SP=Structural Protein; Ng=Neurogenesis; Hox=Homeobox; NR=Nuclear Receptor; NH/NT=NH/NT; AG=Axon Guidance; SLC=SLC Transporter; Fox=Forkhead
Copyright © 2010 RIKEN Center for developmental Biology.