Photoperiodism

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Photoperiodism: 24-h rhythmic genes

24-h rhythmic genes both in short-day and long-day conditions (Help)

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Probe set ID P-value FDR Symbol Name Gene Category phase (short day) phase (long day) max. correl. (short day) [desc] max. correl. (long day) amplitude (short day) amplitude (long day) rel. amplitude (short day) rel. amplitude (long day)
126 1449349_at [new page][B* page] 9.88874e-06 0.0038119 Nudt1 nudix (nucleoside diphosphate linked moiety X)-type motif 1 5.84878 0.87645 0.896702 155.188 155.791 0.360637 0.315292 0.00116295
127 1423480_at [new page][B* page] 0.000132914 0.0150614 Nol11 nucleolar protein 11 7.54845 0.760324 0.896444 172.329 125.302 0.336225 0.236864 0.0188122
128 1452661_at [new page][B* page] 0.000312243 0.0247476 Tfrc transferrin receptor 9.4103 0.698035 0.896221 415.351 499.646 0.289756 0.252328 0.0470355
129 1428643_at [new page][B* page] 2.68758e-07 0.000485571 Mgat5 mannoside acetylglucosaminyltransferase 5 8.0217 0.949116 0.896152 747.184 620.379 0.322385 0.286609 2.43897e-05
130 1433398_at [new page][B* page] 1.04788e-07 0.000322535 Fgd3 FYVE, RhoGEF and PH domain containing 3 3.85734 0.961562 0.895681 220.316 161.464 1.24401 0.951477 8.86898e-06
131 1425792_a_at [new page][B* page] 9.84358e-05 0.0124795 Rorc RAR-related orphan receptor gamma TF NR 0.393449 0.781141 0.895444 26.9521 38.1922 0.25284 0.459437 0.0129687
132 1436595_at [new page][B* page] 3.12696e-06 0.00220911 Rbm34 RNA binding motif protein 34 9.68137 0.910321 0.895348 266.51 175.875 0.584595 0.480128 0.000318175
133 1457373_at [new page][B* page] 6.77571e-05 0.010359 17.8832 0.802235 0.894733 188.341 271.636 0.711617 0.62843 0.00846323
134 1428052_a_at [new page][B* page] 3.62929e-05 0.00747417 Zmym1 zinc finger, MYM domain containing 1 19.9436 0.831115 0.894695 278.458 274.053 0.61047 0.709819 0.00431254
135 1438542_at [new page][B* page] 3.50115e-05 0.00736954 Trp53 transformation related protein 53 TF Ng 9.07248 0.833094 0.894459 17.6867 17.3347 0.416117 0.409598 0.00409636
136 1455686_at [new page][B* page] 0.000140147 0.0154999 11.9522 0.762923 0.894261 150.997 109.861 0.598611 0.342264 0.0179952
137 1426581_at [new page][B* page] 0.000184041 0.0179275 Ptpmt1 protein tyrosine phosphatase, mitochondrial 1 7.83897 0.745782 0.894001 377.945 131.728 0.524795 0.23409 0.0238742
138 1416749_at [new page][B* page] 4.90097e-06 0.00259314 Htra1 HtrA serine peptidase 1 5.60936 0.899902 0.893736 1550.56 1342.66 0.432273 0.35032 0.000475599
139 1449001_at [new page][B* page] 0.00013406 0.0150779 Ivd isovaleryl coenzyme A dehydrogenase 19.1677 0.767096 0.893734 132.432 153.774 0.192199 0.264277 0.0167336
140 1447898_s_at [new page][B* page] 6.22197e-06 0.00288441 Srsf6 serine/arginine-rich splicing factor 6 8.42634 0.895006 0.893104 670.29 755.08 0.21483 0.230902 0.000604199
141 1452869_at [new page][B* page] 0.000281004 0.0234362 Prpf38b PRP38 pre-mRNA processing factor 38 (yeast) domain containing B 18.1941 0.71749 0.892601 308.095 299.497 0.424171 0.325963 0.0363218
142 1429205_at [new page][B* page] 0.000223759 0.0201835 Mllt3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 TF 8.72766 0.734917 0.892572 191.378 186.611 0.234594 0.214847 0.0282222
143 1458640_at [new page][B* page] 2.19722e-05 0.00595422 10.1821 0.855441 0.892252 26.3253 10.6473 0.596032 0.252875 0.00226492
144 1451163_at [new page][B* page] 0.000146253 0.0157426 Tinf2 Terf1 (TRF1)-interacting nuclear factor 2 9.78451 0.764836 0.892187 83.3251 80.1345 0.228611 0.227983 0.0174353
145 1452718_at [new page][B* page] 3.87031e-05 0.00782758 Ubr5 ubiquitin protein ligase E3 component n-recognin 5 7.32097 0.832922 0.892088 400.581 434.81 0.182908 0.174185 0.00411853
146 1438995_at [new page][B* page] 0.00117305 0.048715 23.9642 0.569124 0.892065 14.0617 16.9457 0.253907 0.315158 0.171087
147 1427122_at [new page][B* page] 0.000592992 0.035283 Copg2as2 coatomer protein complex, subunit gamma 2, antisense 2 13.9108 0.651772 0.89199 149.015 130.365 0.632144 0.421426 0.0804505
148 1441938_x_at [new page][B* page] 1.54281e-05 0.00499768 Cables1 CDK5 and Abl enzyme substrate 1 16.1096 0.868833 0.891721 48.9854 48.4567 0.815516 0.753734 0.00151216
149 1428069_at [new page][B* page] 0.000780075 0.0396591 Cdca7 cell division cycle associated 7 TF 13.6943 0.623095 0.891644 35.9537 37.993 0.320583 0.331252 0.107137
150 1423853_at [new page][B* page] 6.92359e-05 0.0105138 6330527O06Rik RIKEN cDNA 6330527O06 gene 19.3504 0.807188 0.891526 266.045 136.741 0.704045 0.433611 0.0075597
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TF=Transcription Factor; Ch=Channel; GPCR=GPCR; CA=Cell Adhesion; EM=Extracellular Matrix; SP=Structural Protein; Ng=Neurogenesis; Hox=Homeobox; NR=Nuclear Receptor; NH/NT=NH/NT; AG=Axon Guidance; SLC=SLC Transporter; Fox=Forkhead
Copyright © 2010 RIKEN Center for developmental Biology.