Photoperiodism

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Photoperiodism: 24-h rhythmic genes

24-h rhythmic genes both in short-day and long-day conditions (Help)

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Probe set ID [desc] P-value FDR Symbol Name Gene Category phase (short day) phase (long day) max. correl. (short day) max. correl. (long day) amplitude (short day) amplitude (long day) rel. amplitude (short day) rel. amplitude (long day)
1 1460725_at [new page][B* page] 0.0010401 0.0458834 Xpa xeroderma pigmentosum, complementation group A 9.55659 0.657261 0.872159 90.9456 99.4693 0.40618 0.408878 0.0758409
2 1460712_s_at [new page][B* page] 0.000247261 0.0217807 Ap1g1 adaptor protein complex AP-1, gamma 1 subunit 19.4104 0.759372 0.878459 179.586 167.141 0.215499 0.21192 0.0191204
3 1460662_at [new page][B* page] 4.88856e-05 0.00864623 Per3 period homolog 3 (Drosophila) TF 17.911 0.909662 0.788634 12.7103 15.8457 0.390698 0.409373 0.000323718
4 1460645_at [new page][B* page] 0.000306066 0.0245161 Chordc1 cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 20.7412 0.796567 0.8481 4114.25 3758.91 0.942776 0.59538 0.00952972
5 1460630_at [new page][B* page] 8.20988e-05 0.0113353 Camk2d calcium/calmodulin-dependent protein kinase II, delta 6.91024 0.912231 0.752598 86.6373 57.3825 0.359774 0.256865 0.000296002
6 1460597_at [new page][B* page] 0.00107641 0.0466321 Asxl2 additional sex combs like 2 (Drosophila) TF 10.8298 0.813831 0.768985 95.0357 109.43 0.266987 0.273991 0.00655085
7 1460576_at [new page][B* page] 0.000437978 0.0303432 Exoc6 exocyst complex component 6 8.13082 0.809891 0.821047 225.693 266.336 0.22861 0.243026 0.00710849
8 1460565_at [new page][B* page] 0.000177216 0.0175276 Slc41a1 solute carrier family 41, member 1 SLC 3.66733 0.906818 0.711095 840.311 455.476 0.455969 0.286641 0.000368063
9 1460519_a_at [new page][B* page] 0.000129074 0.0147137 Mettl5 methyltransferase like 5 8.28844 0.88993 0.776956 100.763 49.2129 0.296544 0.161299 0.000738343
10 1460398_at [new page][B* page] 0.000187112 0.0181128 Phf8 PHD finger protein 8 18.2849 0.77774 0.877557 359.763 322.924 0.376246 0.30558 0.0137846
11 1460361_at [new page][B* page] 0.00109505 0.0471707 5033414D02Rik RIKEN cDNA 5033414D02 gene 10.9123 0.895245 0.561815 184.328 72.4167 0.359488 0.173773 0.000597548
12 1460345_at [new page][B* page] 0.000345854 0.0264123 Aida axin interactor, dorsalization associated 11.2502 0.880491 0.732408 71.6921 45.1585 0.27749 0.171757 0.00103435
13 1460342_s_at [new page][B* page] 0.000190002 0.0181938 Mprip myosin phosphatase Rho interacting protein 5.42582 0.92966 0.588376 826.033 381.707 0.252319 0.139114 0.000107536
14 1460258_at [new page][B* page] 5.50099e-05 0.00925748 Lect1 leukocyte cell derived chemotaxin 1 20.5692 0.861257 0.857447 75.4332 82.0876 0.369001 0.332237 0.00192013
15 1460243_at [new page][B* page] 0.000673289 0.037296 Sptlc2 serine palmitoyltransferase, long chain base subunit 2 8.90592 0.880823 0.675901 178.179 192.159 0.319801 0.316194 0.00102548
16 1460240_a_at [new page][B* page] 2.2723e-05 0.00595422 Hnrnpc heterogeneous nuclear ribonucleoprotein C 23.6973 0.934174 0.764172 2166.73 3048.16 0.281914 0.366018 8.97985e-05
17 1460199_a_at [new page][B* page] 0.000111721 0.0135087 Pafah1b1 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 Ng 21.2294 0.943054 0.548497 226.544 239.283 0.257862 0.257968 4.43449e-05
18 1460171_at [new page][B* page] 0.000463346 0.0310511 Cops5 COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana) TF 9.71972 0.882148 0.70569 724.25 296.564 0.374585 0.147344 0.000981131
19 1460167_at [new page][B* page] 9.5216e-05 0.0122346 Aldh7a1 aldehyde dehydrogenase family 7, member A1 1.41867 0.81602 0.875769 228.901 249.588 0.164077 0.180606 0.00623711
20 1460061_at [new page][B* page] 0.000127613 0.0147027 6.09985 0.794522 0.880661 117.439 146.088 0.293182 0.363188 0.00992994
21 1460053_at [new page][B* page] 0.000651912 0.0367983 Smyd4 SET and MYND domain containing 4 10.3559 0.844165 0.757694 147.015 82.1522 0.406833 0.29552 0.00309638
22 1460009_at [new page][B* page] 0.000671111 0.037296 Ier5 immediate early response 5 7.55815 0.870161 0.703976 45.1858 25.1131 0.535666 0.351948 0.00144343
23 1460001_at [new page][B* page] 0.000729884 0.0386367 Pgpep1 pyroglutamyl-peptidase I 5.23294 0.840981 0.754537 88.3298 43.7543 0.235333 0.133792 0.00333141
24 1459994_x_at [new page][B* page] 0.000373643 0.0276262 Trfr2 transferrin receptor 2 8.82703 0.752236 0.86834 130.181 71.5994 0.654267 0.38652 0.021515
25 1459897_a_at [new page][B* page] 4.0521e-05 0.00804958 Sbsn suprabasin 9.07619 0.908859 0.800727 191.749 105.708 0.458288 0.265155 0.00033813
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TF=Transcription Factor; Ch=Channel; GPCR=GPCR; CA=Cell Adhesion; EM=Extracellular Matrix; SP=Structural Protein; Ng=Neurogenesis; Hox=Homeobox; NR=Nuclear Receptor; NH/NT=NH/NT; AG=Axon Guidance; SLC=SLC Transporter; Fox=Forkhead
Copyright © 2010 RIKEN Center for developmental Biology.