Photoperiodism

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Photoperiodism: 24-h rhythmic genes

24-h rhythmic genes both in short-day and long-day conditions (Help)

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Probe set ID P-value FDR Symbol Name Gene Category phase (short day) phase (long day) max. correl. (short day) max. correl. (long day) [desc] amplitude (short day) amplitude (long day) rel. amplitude (short day) rel. amplitude (long day)
1 1437799_at [new page][B* page] 6.96597e-06 0.00302089 4933407H18Rik RIKEN cDNA 4933407H18 gene 6.78008 0.919211 0.857234 99.9716 54.0177 0.594179 0.361257 0.000207312
2 1440250_at [new page][B* page] 4.53508e-05 0.00842076 Col4a4 collagen, type IV, alpha 4 EM SP 6.59213 0.916591 0.778038 99.7391 60.1191 0.590023 0.316938 0.000242788
3 1424745_at [new page][B* page] 5.40669e-07 0.000696706 Agxt2l2 alanine-glyoxylate aminotransferase 2-like 2 10.2339 0.933654 0.909982 99.4882 46.0189 0.390053 0.225062 9.20157e-05
4 1444236_at [new page][B* page] 0.000159516 0.0163585 AW552393 expressed sequence AW552393 8.42982 0.88714 0.770117 99.3842 98.8398 0.347278 0.343421 0.000820381
5 1452944_at [new page][B* page] 0.00103056 0.0458834 Afmid arylformamidase 8.13993 0.88213 0.627184 99.1532 31.2898 0.644259 0.310372 0.000981131
6 1454846_at [new page][B* page] 0.000827558 0.0409829 Utp15 UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast) 12.5402 0.754101 0.835975 99.0557 102.002 0.255499 0.239678 0.0208643
7 1416608_a_at [new page][B* page] 0.000696475 0.0376322 BC004004 cDNA sequence BC004004 5.68241 0.854666 0.734751 983.157 646.084 0.358426 0.261746 0.0023148
8 1423869_s_at [new page][B* page] 4.33664e-05 0.00826035 Txnrd3 thioredoxin reductase 3 8.46892 0.90725 0.800694 98.5996 136.939 0.325688 0.417533 0.000363628
9 1420124_s_at [new page][B* page] 4.42195e-05 0.00837959 Tcta T-cell leukemia translocation altered gene 7.5167 0.866945 0.859614 978.48 311.254 0.605531 0.22852 0.00161748
10 1436659_at [new page][B* page] 0.000351943 0.0266325 Dclk1 doublecortin-like kinase 1 Ng 8.21047 0.843303 0.795289 976.416 1058.99 0.289472 0.259715 0.00315736
11 1426698_a_at [new page][B* page] 0.000926154 0.0436929 Hnrnpm heterogeneous nuclear ribonucleoprotein M 21.5668 0.861862 0.696994 970.336 1179.11 0.436497 0.42262 0.00188466
12 1427172_at [new page][B* page] 3.13647e-05 0.00690039 Ofd1 oral-facial-digital syndrome 1 gene homolog (human) 9.54123 0.952817 0.605541 97.9287 64.7716 0.385598 0.284991 1.7738e-05
13 1430316_at [new page][B* page] 2.40968e-05 0.00612001 Ispd isoprenoid synthase domain containing 10.5368 0.441268 0.968442 97.7553 78.6497 0.284342 0.221152 0.380177
14 1435723_at [new page][B* page] 0.000128019 0.0147027 Gm9776 predicted gene 9776 9.51507 0.907689 0.733535 97.7451 50.5857 0.597455 0.376599 0.000355868
15 1423596_at [new page][B* page] 0.000262217 0.0224833 Nek6 NIMA (never in mitosis gene a)-related expressed kinase 6 7.24318 0.852008 0.799517 96.8667 48.4807 0.259355 0.141596 0.0025077
16 1456759_at [new page][B* page] 0.0011974 0.0492288 Lrrc4c leucine rich repeat containing 4C Ng AG 7.1587 0.79771 0.781578 96.3504 42.4675 0.502615 0.242733 0.00928472
17 1454725_at [new page][B* page] 1.30126e-06 0.00143142 Tra2a transformer 2 alpha homolog (Drosophila) 18.8243 0.904576 0.92101 955.286 728.498 0.540428 0.369866 0.000401321
18 1435742_at [new page][B* page] 0.00101607 0.0456886 Smek1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) 21.522 0.721872 0.84657 95.4176 66.6125 0.486409 0.220177 0.0342165
19 1424835_at [new page][B* page] 0.00044001 0.0303432 Gstm4 glutathione S-transferase, mu 4 6.4252 0.75884 0.858844 95.2797 144.021 0.179713 0.254047 0.0192911
20 1428232_at [new page][B* page] 0.000812445 0.0406682 Cpsf6 cleavage and polyadenylation specific factor 6 17.9019 0.833788 0.758831 95.0563 147.067 0.231931 0.277138 0.0040243
21 1460597_at [new page][B* page] 0.00107641 0.0466321 Asxl2 additional sex combs like 2 (Drosophila) TF 10.8298 0.813831 0.768985 95.0357 109.43 0.266987 0.273991 0.00655085
22 1416721_s_at [new page][B* page] 4.92564e-07 0.000673185 Srsf6 serine/arginine-rich splicing factor 6 7.23267 0.897096 0.941994 943.835 819.685 0.317486 0.258366 0.00054766
23 1420462_at [new page][B* page] 0.00066769 0.037296 Il1rapl2 interleukin 1 receptor accessory protein-like 2 10.8886 0.87609 0.688328 94.7576 86.7081 0.600878 0.529215 0.00117847
24 1436888_at [new page][B* page] 0.00053687 0.0334076 Nhlh2 nescient helix loop helix 2 TF 10.7462 0.446918 0.92648 94.6035 95.7061 0.437358 0.362513 0.369544
25 1439780_at [new page][B* page] 0.000408961 0.0290128 Rpl7l1 ribosomal protein L7-like 1 9.17347 0.894864 0.677874 94.5101 46.5259 0.257703 0.138436 0.000606417
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TF=Transcription Factor; Ch=Channel; GPCR=GPCR; CA=Cell Adhesion; EM=Extracellular Matrix; SP=Structural Protein; Ng=Neurogenesis; Hox=Homeobox; NR=Nuclear Receptor; NH/NT=NH/NT; AG=Axon Guidance; SLC=SLC Transporter; Fox=Forkhead
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