Photoperiodism

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Photoperiodism: 24-h rhythmic genes

24-h rhythmic genes both in short-day and long-day conditions (Help)

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Probe set ID P-value FDR Symbol Name Gene Category [desc] phase (short day) phase (long day) max. correl. (short day) max. correl. (long day) amplitude (short day) amplitude (long day) rel. amplitude (short day) rel. amplitude (long day)
1 1416958_at [new page][B* page] 4.09474e-07 0.000661445 Nr1d2 nuclear receptor subfamily 1, group D, member 2 TF NR 13.9743 0.964089 0.841426 3697.84 3971.74 0.807742 0.703812 6.65174e-06
2 1426464_at [new page][B* page] 4.44775e-07 0.000673185 Nr1d1 nuclear receptor subfamily 1, group D, member 1 TF NR 10.1297 0.951303 0.877252 335.583 269.552 1.03792 1.02136 2.10638e-05
3 1457250_x_at [new page][B* page] 8.17739e-06 0.00341489 Nr1d2 nuclear receptor subfamily 1, group D, member 2 TF NR 12.0269 0.915045 0.858688 18.1739 15.6996 0.389864 0.334155 0.000257201
4 1425792_a_at [new page][B* page] 9.84358e-05 0.0124795 Rorc RAR-related orphan receptor gamma TF NR 0.393449 0.781141 0.895444 26.9521 38.1922 0.25284 0.459437 0.0129687
5 1438796_at [new page][B* page] 0.000937948 0.0439277 Nr4a3 nuclear receptor subfamily 4, group A, member 3 TF NR 22.5559 0.821805 0.766958 165.884 164.532 0.689876 0.623652 0.0054256
6 1426230_at [new page][B* page] 0.0012042 0.0493667 Sphk2 sphingosine kinase 2 TF NH/NT 12.4539 0.653151 0.868749 56.0758 73.4284 0.335999 0.458429 0.079302
7 1418317_at [new page][B* page] 0.000511971 0.0328455 Lhx2 LIM homeobox protein 2 TF Ng Hox 7.24292 0.855387 0.754974 441.847 226.694 0.605386 0.318062 0.00226824
8 1438542_at [new page][B* page] 3.50115e-05 0.00736954 Trp53 transformation related protein 53 TF Ng 9.07248 0.833094 0.894459 17.6867 17.3347 0.416117 0.409598 0.00409636
9 1418790_at [new page][B* page] 7.4656e-05 0.0108929 Fezf2 Fez family zinc finger 2 TF Ng 8.66176 0.909616 0.764311 153.793 87.1046 0.727365 0.456444 0.000324827
10 1450333_a_at [new page][B* page] 0.000621385 0.0363019 Gata2 GATA binding protein 2 TF Ng 7.01527 0.669308 0.885739 1407.25 373.8 1.6175 0.349979 0.0662779
11 1437039_at [new page][B* page] 0.000999111 0.0453329 Cops2 COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana) TF Ng 11.7363 0.760449 0.82343 247.631 335.353 0.197587 0.19829 0.0187756
12 1452844_at [new page][B* page] 4.52373e-05 0.00842076 Pou6f1 POU domain, class 6, transcription factor 1 TF Hox 5.44032 0.899759 0.811031 241.186 137.554 0.275642 0.207651 0.000478925
13 1427233_at [new page][B* page] 6.75786e-05 0.010359 Tshz1 teashirt zinc finger family member 1 TF Hox 10.6669 0.927189 0.710102 260.051 133.266 0.473049 0.2991 0.000127492
14 1436182_at [new page][B* page] 8.23521e-05 0.0113353 Satb1 special AT-rich sequence binding protein 1 TF Hox 9.49452 0.85838 0.844736 117.562 104.752 0.365363 0.279784 0.00208089
15 1459250_at [new page][B* page] 9.20293e-05 0.0120308 Tshz2 teashirt zinc finger family member 2 TF Hox 8.12826 0.862076 0.835745 22.233 18.5966 0.504836 0.437095 0.00187246
16 1437492_at [new page][B* page] 0.000307668 0.0245161 Mkx mohawk homeobox TF Hox 17.7711 0.831633 0.815663 45.5659 56.2937 0.545246 0.548001 0.00424824
17 1429099_at [new page][B* page] 0.000397733 0.0284281 Duxbl double homeobox B-like TF Hox 8.39589 0.808687 0.826567 55.0259 64.924 0.286603 0.322241 0.00731248
18 1432863_a_at [new page][B* page] 0.00083411 0.041138 Nkx2-4 NK2 transcription factor related, locus 4 (Drosophila) TF Hox 5.87253 0.848543 0.732993 245.95 98.9119 0.442707 0.265488 0.00275271
19 1420373_at [new page][B* page] 0.000158514 0.0163223 Foxj2 forkhead box J2 TF Fox 18.9915 0.957455 0.156107 11.1829 9.74885 0.218117 0.209814 1.44121e-05
20 1416982_at [new page][B* page] 0.000458289 0.0308999 Foxo1 forkhead box O1 TF Fox 22.0358 0.875139 0.722466 221.156 235.361 0.220993 0.237159 0.00121727
21 1435221_at [new page][B* page] 0.000743246 0.0390235 Foxp1 forkhead box P1 TF Fox 7.67796 0.753112 0.841208 256.911 251.385 0.318635 0.284839 0.0212013
22 1418102_at [new page][B* page] 0.000172659 0.01719 Hes1 hairy and enhancer of split 1 (Drosophila) TF CA Ng 9.25623 0.922982 0.642065 417.049 170.215 0.481571 0.245585 0.000159642
23 1454960_at [new page][B* page] 4.10644e-07 0.000661445 Smad3 MAD homolog 3 (Drosophila) TF CA 6.20816 0.95014 0.883181 256.175 252.3 0.278491 0.249952 2.32811e-05
24 1425585_at [new page][B* page] 0.000100241 0.0125645 Med12 mediator of RNA polymerase II transcription, subunit 12 homolog (yeast) TF CA 15.0419 0.949501 0.464212 193.25 68.893 0.347402 0.148527 2.32811e-05
25 1455505_at [new page][B* page] 0.000128442 0.0147027 Gatad2a GATA zinc finger domain containing 2A TF CA 7.39641 0.920937 0.686428 125.844 70.1319 0.346437 0.224599 0.000189575
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TF=Transcription Factor; Ch=Channel; GPCR=GPCR; CA=Cell Adhesion; EM=Extracellular Matrix; SP=Structural Protein; Ng=Neurogenesis; Hox=Homeobox; NR=Nuclear Receptor; NH/NT=NH/NT; AG=Axon Guidance; SLC=SLC Transporter; Fox=Forkhead
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